PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.265620.1

Common Name

Csa_2G108620, LOC105434729

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 279aa MW: 32222.1 Da PI: 6.3184

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.265620.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.2	1.9e-50	27	154	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPtdeelv +yLk+kv+++++++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t+ g+Wkatg+d++++s+ Cucsa.265620.1 27 PGFRFHPTDEELVGFYLKRKVQNNPIST-ELIRQLDIYKYDPWDLPKLAWTGEKEWYFYCQRDRKYRNSARPNRVTSVGFWKATGTDRPIYSNsk 120 9************************9.89***********8777899***********************************866 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +glkk+Lvfy+gra k+ ktdW+mhe+rl Cucsa.265620.1 121 sKSTIIGLKKSLVFYTGRACKAIKTDWMMHEFRL 154 55666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.246	25	171	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-57	25	171	IPR003441	NAC domain
Pfam	PF02365	3.3E-26	27	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEERNNETTG NDVEEEEEEE EVIFPLPGFR FHPTDEELVG FYLKRKVQNN PISTELIRQL 60 DIYKYDPWDL PKLAWTGEKE WYFYCQRDRK YRNSARPNRV TSVGFWKATG TDRPIYSNSK 120 SKSTIIGLKK SLVFYTGRAC KAIKTDWMMH EFRLPQSPPN ESWVICRIFK KTNISAAQRA 180 ASSAIPKQHE TMREKPTSTT IDIPLSTYDP FHYFEAKLPD LSVPSEPFIT APPPMEMSDI 240 AKSAIDVSSI LFNISSSLLE DNPNDPFTSL FHSHSHGHX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-51	13	179	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-51	13	179	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-51	13	179	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-51	13	179	6	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	13	179	9	174	NAC domain-containing protein 19
3swm_B	1e-50	13	179	9	174	NAC domain-containing protein 19
3swm_C	1e-50	13	179	9	174	NAC domain-containing protein 19
3swm_D	1e-50	13	179	9	174	NAC domain-containing protein 19
3swp_A	1e-50	13	179	9	174	NAC domain-containing protein 19
3swp_B	1e-50	13	179	9	174	NAC domain-containing protein 19
3swp_C	1e-50	13	179	9	174	NAC domain-containing protein 19
3swp_D	1e-50	13	179	9	174	NAC domain-containing protein 19
4dul_A	8e-51	13	179	6	171	NAC domain-containing protein 19
4dul_B	8e-51	13	179	6	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681846	1e-148	LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBank	LN713259	1e-148	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650139.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	4e-84	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0A0LJY5	0.0	A0A0A0LJY5_CUCSA; Uncharacterized protein
STRING	XP_004160000.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	8e-83	NAC family protein

Link Out ? help Back to Top
Phytozome	Cucsa.265620.1
Entrez Gene	105434729

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]