PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.259870.1 | ||||||||
Common Name | Csa_3G117400, LOC101219767 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 41827.9 Da PI: 5.6701 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H Cucsa.259870.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00021 | 238 | 260 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Cucsa.259870.1 238 YKCETCNKVFRSYQALGGHRASH 260 9***********99999998887 PP | |||||||
3 | zf-C2H2 | 11.4 | 0.001 | 295 | 317 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Cucsa.259870.1 295 HECPVCFRVFSSGQALGGHKRSH 317 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-6 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.48E-5 | 3 | 30 | No hit | No description |
SMART | SM00355 | 0.065 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.25E-7 | 238 | 260 | No hit | No description |
SMART | SM00355 | 0.012 | 238 | 260 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 238 | 265 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.0E-12 | 238 | 262 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 240 | 260 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.25E-7 | 290 | 317 | No hit | No description |
SMART | SM00355 | 0.19 | 295 | 317 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.8E-11 | 295 | 317 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.224 | 295 | 317 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 297 | 317 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDRHKCKLCF RSFSNGRALG GHMRSHMLNL PLPPKGEEDA APPHPHLSED GDSASFLSSP 60 SSSEGDAEEK GVSYGLRENP KRSIRVVDPE FSFAVDAASV VLQDRESETE SSKNPTRRRS 120 KRTRKPDRRH HHHLHHHYNV FKRLQEKKMN HPESWTEAEP VSSISGSTTE EDVAFWLMML 180 SRDKWTKQQG GYEEEEDEED EDEDEDEEEE EEELEESMEE TDDSEAVKFP KNRNRGNYKC 240 ETCNKVFRSY QALGGHRASH KKIKVSLTYN NPQLGSHHEN AATPSSGSMA ERKIHECPVC 300 FRVFSSGQAL GGHKRSHVTG YSNPPKAAQK KFPDSLIDLN LPAPFEEDDV SQIELSAVSD 360 ADFVNAIRQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650633.1 | 0.0 | PREDICTED: zinc finger protein ZAT1 | ||||
TrEMBL | A0A0A0L5N5 | 0.0 | A0A0A0L5N5_CUCSA; Uncharacterized protein | ||||
STRING | XP_008437783.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-55 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.259870.1 |
Entrez Gene | 101219767 |
Publications ? help Back to Top | |||
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