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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.259800.1 | ||||||||
Common Name | Csa_3G117960, LOC105434392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SBP | ||||||||
Protein Properties | Length: 274aa MW: 30747.4 Da PI: 8.0844 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 9.8e-41 | 36 | 113 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gl qrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Cucsa.259800.1 36 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVLGLDQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSH 113 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.8E-34 | 33 | 98 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.453 | 34 | 111 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-38 | 35 | 115 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-32 | 37 | 110 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MCLNLGKRHY FEDSNAPSLI LGKRAKPPFY ATTVPRCQVE GCHVALVNAK DYHRRHRVCE 60 MHSKAPKVVV LGLDQRFCQQ CSRFHVISEF DDSKRSCRRR LAGHNERRRK SSHESARNCT 120 QAENKSMTNG IAYVPSPTGR ALSLLSSKNE SWANSSELSQ RSSAALRELI AENRAAILAR 180 QLILDRDWHP NHGGTDDFGG GGGVGFQQQG LYCEQQHSWE RMNENGGSHV TLDLMQAPSS 240 AFGLLSVREK SKEEDEECCE LWNSFNDHDP HVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-30 | 37 | 110 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004133774.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q7XT42 | 1e-55 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0A0L8C0 | 0.0 | A0A0A0L8C0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155257.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-40 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.259800.1 |
Entrez Gene | 105434392 |
Publications ? help Back to Top | |||
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