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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.259710.1 |
| Common Name | Csa_3G118080, LOC101222132 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
HD-ZIP |
| Protein Properties |
Length: 295aa MW: 32666.3 Da PI: 6.3212 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.259710.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.7 | 4.6e-19 | 141 | 195 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq +Lee F+++++++ +++ LAk+l+Lt rqV vWFqNrRa+ k
Cucsa.259710.1 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTK 195
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 127.4 | 6.1e-41 | 141 | 230 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
Cucsa.259710.1 141 RKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 230
69*************************************************************************************9.55 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MGGRDDDVGL TLSLGFGVTT QSTHMQRPSS MHNHHLRKTH WNELFQFSDR NADSRSFLRG 60
IDVNRLPTGV DGEEENGVSS PNSTISSISG KRSEREAAGD EAEAEAEAEA EAEAEAEAER 120
ASCSRGSDDE DGGGGDGDAS RKKLRLSKEQ SMVLEETFKE HNTLNPKQKL ALAKQLNLTP 180
RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTEENRRL QKEVQELRAL KLSPQLYMHM 240
NPPTTLTMCP QCERVAVSSS SSTSAATTTR HQAAAGVQRP SMAINPWAVL PIQR*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 139 | 145 | SRKKLRL |
| 2 | 189 | 197 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zou LJ, et al.
Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
Plant Cell Physiol., 2016. 57(9): p. 1879-89
[PMID:27328697] - Caggiano MP, et al.
Cell type boundaries organize plant development.
Elife, 2018.
[PMID:28895530]
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