PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.259380.1
Common NameCsa_3G119420, LOC105434810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 171aa    MW: 18056.7 Da    PI: 8.9924
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.259380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-392786261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rkn+k 
  Cucsa.259380.1 27 PQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRKP 86
                    6899*****************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-252685IPR003851Zinc finger, Dof-type
PfamPF027012.7E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9013185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAMMESGAN GGGGGGGGGG LKGKGRPQEQ LNCPRCKSSN TKFCYYNNYS LTQPRYFCKS  60
CRRYWTEGGS LRNIPVGGGS RKNRKPHGSV SGSGSVHHPQ PQPQVYQAQD LNLGFATTAE  120
ATTAMDNGGH GGFGCYIPNL MPYSGRETAA VEENSGNNGY WNGMFGGGPP X
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650669.11e-122PREDICTED: dof zinc finger protein DOF3.7
SwissprotQ433854e-35DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0A0L5U81e-120A0A0A0L5U8_CUCSA; Uncharacterized protein
STRINGXP_008437866.11e-100(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.31e-35Dof family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]