PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.256710.1
Common NameCsa_3G129620, LOC101209164
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 367aa    MW: 40214.4 Da    PI: 9.8172
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.256710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.72e-2057148187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++ +          ++++qC++k+e+l+kry+ + +++++   s+ +s++++f++++a
  Cucsa.256710.1  57 CWSHEETIALIDSYRDKWYSLRRGNLKATHWQDVADSVshrcPNASPPKTAVQCRHKMEKLRKRYRTELQRARSMpLSRFTSSWVHFKRMDA 148
                     8********************************999996655666778999***********************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-2156149No hitNo description
SMARTSM005951.1E-1165154IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVSSPMASPS SPIDGSPPSS SHPSNPLQAL TLSAPLPPPS NPPPQATASS RRLPPPCWSH  60
EETIALIDSY RDKWYSLRRG NLKATHWQDV ADSVSHRCPN ASPPKTAVQC RHKMEKLRKR  120
YRTELQRARS MPLSRFTSSW VHFKRMDAME KGPSAKPEES DSGGEEEEEE EEDDQELYEE  180
FRNAGASATR SARKLYGNGM NSGGGGGGSG GDVAAAAAAA GGFRIRIPTG VSIAQPGLKS  240
YPKAEQKMNP NSNPVSGMNP AAVNFGTRVV RESNPVRPVT GKRGERERER DPVAEMVSAI  300
KTLGDGFVRM ERMKMEMARE IEAMRMEMEI KRTEMILDSQ QRIVEAFAKA VTENKKKTKR  360
IPSPEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004133978.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X1
RefseqXP_011650861.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A0A0L4130.0A0A0A0L413_CUCSA; Uncharacterized protein
STRINGXP_004133978.10.0(Cucumis sativus)
STRINGXP_004174107.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-74Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]