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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.255320.1 | ||||||||
Common Name | Csa_3G135630, LOC101213488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 15105.5 Da PI: 5.988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 22 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + r r++lg+f taeeAa+a+++a+ +++g+ Cucsa.255320.1 22 RYRGVRRRP-WGKFAAEIRDSR----RqgVRIWLGTFNTAEEAARAYDRAAYNMRGH 73 59*******.**********42....124**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 22 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.45E-18 | 22 | 81 | No hit | No description |
Pfam | PF00847 | 3.1E-15 | 22 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 22 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.538 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-34 | 22 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MDESGGRGRG YGDDSTGSRE IRYRGVRRRP WGKFAAEIRD SRRQGVRIWL GTFNTAEEAA 60 RAYDRAAYNM RGHLAILNFP NEYPLTRGGA YSSGSSSSSS MSMRQNEVIE FEYLDDKVLE 120 DLLDYGEESD KRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-36 | 1 | 118 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-153 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-153 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134413.1 | 4e-92 | PREDICTED: ethylene-responsive transcription factor 14 | ||||
Swissprot | Q9LTC5 | 1e-42 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0A0L9V5 | 1e-90 | A0A0A0L9V5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004170780.1 | 2e-91 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.255320.1 |
Entrez Gene | 101213488 |
Publications ? help Back to Top | |||
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