PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.254540.1
Common NameCsa_3G146390, LOC101203694
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 789aa    MW: 85397.7 Da    PI: 5.3592
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.254540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.4e-16491529240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Cucsa.254540.1 491 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 529
                     689**********************************96 PP
2TCR50.54e-16576614139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Cucsa.254540.1 576 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 614
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.095491616IPR005172CRC domain
PfamPF036381.1E-11493528IPR005172CRC domain
SMARTSM011144.4E-17576617IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11578614IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDTPERNQIG STSVSKFEDS PVFNYINNLS PIQPVKSIHT SQTFNSLSFA SLPSVFTSPH  60
ASSYKESRFL RRHSISDLSK PDFSTEDGSK VETDGGATGN VAQLQDDSSP PDEKSDSLSN  120
PSTELPSERP ESTKEEPQAS KSDSSRPDCD QKLPDSVLKS GEDLALSDSC VKNKSGNGSS  180
EAEGNKQVIN HTEEREGTGY DWESLMTEGA DLLIFSSPNG SEAIRLVQKP LDLVTGFASS  240
TLSQIMENDN ADLSKMRIAD PVESSGGQHE IEFLSSQAGE ACELKDMDQG IDSLSFPNSS  300
NSMSREITDD EVARYIADDC KPASNLYRGM RRRCLDFEAA VSRRKNLEDS SNGGSVSKRS  360
EEKTASMDKQ LVPYKSGGVA TRCVLTGIGL HLNALATTSK DAKNLNHDKF SSERQLNLPN  420
SSASCHSPSG GLDPLLTSAV TERDMDPSGN GAQNEEDGAR ASAYVLAEDF NQNSPKKKRR  480
RLEPAGETES SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQDCFNKPI HEDTVLATRK  540
QIESRNPLAF APKVIRNSDS LPEPGDESNK TPASARHKRG CNCKKSSCLK KYCECYQGGV  600
GCSISCRCEG CKNAFGRKDG SSILGLEAEL EEEETEANHK SMMDKGLQGP EIQNNEEQNP  660
GSAIPSTPLQ LSRQLVALPF SSRSKPLRSS FLNVGSSSGF YAGHKLEKPN ILRAQPDLGI  720
NTKPVLEDEM PDILRGECSP GAGVKTGSPN SKRISPPQSD FGLSPLPRTG RKLILQSIPS  780
FPSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1749361312120Protein lin-54 homolog
5fd3_B5e-1749361312120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474481PKKKRRRL
2475480KKKRRR
3477481KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134126.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A0A0L5F30.0A0A0A0L5F3_CUCSA; Uncharacterized protein
STRINGXP_004168329.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-135TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]