PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 547aa MW: 59199.8 Da PI: 7.3754

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.251830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	363	410	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cucsa.251830.1 363 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 410 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-17	357	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.66E-10	357	414	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-16	359	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.326	359	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	363	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	365	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MEKEFFMNDG GCSFYGMEIQ PNELNSSGGL LNPNWENSMD HSDLFESTLS SIVSSPANSH 60 IIGGGGGGGG GDNLMMRELI GRLGSICNSG EISPHSYIGG TNNNSTNTSC YNTPLNSPPK 120 LNLSSIMESQ IRGNLIPHHQ NLAPFSTDPG FAERAARFSC FGNRNLGGLN GQLGSNETQE 180 LSNRSMAGAG VESGKLSRVS SNKSFNIGGV GSPQMVVQEG DQSPVQKGNS MPIPNKKVSN 240 RFSRSSTPEN AGDSREGSSV SEQNPIGESG LKGKAETNTR KRKSVQTGQA KDVKAAVENH 300 EPNGKKIKPD EVTKKEIDGA KGKAEAKSSG DANQKQNNDS SKPPEPPKDY IHVRARRGQA 360 TDSHSLAERV RREKISKRMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL 420 ATVNPRMDFN METLVPKDIF KGPGSSSHTV YPMDSSVPQF AYDYQSMHVT PLHSGIPNGT 480 EKQFSVASAN DVMQRNLSGQ MTNGYNEVVN GIQISKFWED ELHTVVQMGY GQNQLQNAND 540 EMKSEL*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MEKEFFMNDG GCSFYGMEIQ PNELNSSGGL LNPNWENSMD HSDLFESTLS SIVSSPANSH  60
IIGGGGGGGG GDNLMMRELI GRLGSICNSG EISPHSYIGG TNNNSTNTSC YNTPLNSPPK  120
LNLSSIMESQ IRGNLIPHHQ NLAPFSTDPG FAERAARFSC FGNRNLGGLN GQLGSNETQE  180
LSNRSMAGAG VESGKLSRVS SNKSFNIGGV GSPQMVVQEG DQSPVQKGNS MPIPNKKVSN  240
RFSRSSTPEN AGDSREGSSV SEQNPIGESG LKGKAETNTR KRKSVQTGQA KDVKAAVENH  300
EPNGKKIKPD EVTKKEIDGA KGKAEAKSSG DANQKQNNDS SKPPEPPKDY IHVRARRGQA  360
TDSHSLAERV RREKISKRMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL  420
ATVNPRMDFN METLVPKDIF KGPGSSSHTV YPMDSSVPQF AYDYQSMHVT PLHSGIPNGT  480
EKQFSVASAN DVMQRNLSGQ MTNGYNEVVN GIQISKFWED ELHTVVQMGY GQNQLQNAND  540
EMKSEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	283	TRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147655.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A0A0L639	0.0	A0A0A0L639_CUCSA; Uncharacterized protein
STRING	XP_004169691.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.251830.1
Entrez Gene	101211278

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]