PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 500aa MW: 57254.7 Da PI: 5.3344

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.250070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93	2.9e-29	45	129	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++aL+++r++m++++r+++lk+plWeevs+k+ e g++r++k+Ckek+en+ k++k++k+g+++++ + ++++yf+qlea Cucsa.250070.1 45 RWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLGELGYNRNAKKCKEKFENIYKYHKRTKDGRSGKS--NGKNYRYFEQLEA 129 8******************************************************************974..4457*****85 PP
2	trihelix	99.7	2.4e-31	326	411	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++++ +++++ k+plWee+s +m++ g+ r++k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a Cucsa.250070.1 326 RWPKEEIDALIQLRTNLQMKYQDNGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKKR-PEDSKTCPYFQQLDA 411 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.4E-4	42	104	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.224	44	102	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-18	44	130	No hit	No description
CDD	cd12203	1.89E-21	44	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-5	319	382	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.491	319	383	IPR017877	Myb-like domain
SMART	SM00717	6.8E-4	323	385	IPR001005	SANT/Myb domain
Pfam	PF13837	2.3E-22	325	412	No hit	No description
CDD	cd12203	2.81E-23	325	390	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MLEISPSPEN SSAAVADANR VFKEEAAAAS AGVLEEADRN WPGNRWPREE TMALLKVRSS 60 MDTAFRDASL KAPLWEEVSR KLGELGYNRN AKKCKEKFEN IYKYHKRTKD GRSGKSNGKN 120 YRYFEQLEAL DNHSLLPSQA DSMEEIPRII PNNVVHNAIP CSVVNPGANF VETTTTSLST 180 STTSSSSKES GGTRKKKRKF VEFFERLMNE VIEKQEKLQK KFVEALEKCE VERLAREEEW 240 KMQELARIKK ERERLNQERS IAAAKDAAVL SFLKVFSEQG GTVQFPENLL LMENLTEKQD 300 DANGERNTST QENINNGNSN QISSSRWPKE EIDALIQLRT NLQMKYQDNG PKGPLWEEIS 360 LAMKKLGYDR NAKRCKEKWE NINKYFKRVK ESNKKRPEDS KTCPYFQQLD ALYKQKSKKV 420 INNPANPNYE LKPEELLMHM MGSQEETHQP ESATDDGEAE NADNQNQEDE GEEGEDEDED 480 YRIVANNNNN NNNNQMQVN*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MLEISPSPEN SSAAVADANR VFKEEAAAAS AGVLEEADRN WPGNRWPREE TMALLKVRSS  60
MDTAFRDASL KAPLWEEVSR KLGELGYNRN AKKCKEKFEN IYKYHKRTKD GRSGKSNGKN  120
YRYFEQLEAL DNHSLLPSQA DSMEEIPRII PNNVVHNAIP CSVVNPGANF VETTTTSLST  180
STTSSSSKES GGTRKKKRKF VEFFERLMNE VIEKQEKLQK KFVEALEKCE VERLAREEEW  240
KMQELARIKK ERERLNQERS IAAAKDAAVL SFLKVFSEQG GTVQFPENLL LMENLTEKQD  300
DANGERNTST QENINNGNSN QISSSRWPKE EIDALIQLRT NLQMKYQDNG PKGPLWEEIS  360
LAMKKLGYDR NAKRCKEKWE NINKYFKRVK ESNKKRPEDS KTCPYFQQLD ALYKQKSKKV  420
INNPANPNYE LKPEELLMHM MGSQEETHQP ESATDDGEAE NADNQNQEDE GEEGEDEDED  480
YRIVANNNNN NNNNQMQVN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681912	0.0	LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147355.2	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	3e-70	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0A0LK12	0.0	A0A0A0LK12_CUCSA; Uncharacterized protein
STRING	XP_004169667.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-118	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.250070.1
Entrez Gene	101215942

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]