PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.242910.2

Common Name

Csa_3G810510, LOC101204523

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 367aa MW: 39746.1 Da PI: 9.1459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.242910.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	294	339	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +Av+YIk+Lq Cucsa.242910.2 294 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKELQ 339 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.32	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-16	291	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.90E-13	292	341	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-15	293	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	294	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-12	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGTNTHQSFQ QPNSALLRFR SAPSSLFADF SHGIDSKRLN PFEGSESERL VSRFGSRADG 60 CNSNDSESPV AGNYSSGLPP HYPRLSSAVN CSSSSSSSSC SSSSSSMCSS LGFLGSNLVR 120 QSSSPAGVLS QLNQNGYGGG SFSRLSGNNN GVEVVSPSSN RLNSQISFSS LVPSSLGMFP 180 QISEQVVGNE KLSNSNNGET QFFTPSGFPF ASWNESSQFS ETFPGIKRDP DSNKKFSSGH 240 QNGEIGNRVH LLSHHLSLPK NVSDVASIEK LLQLQDAVPC RIRAKRGCAT HPRSIAERVR 300 RTRISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKELQK QFKTLSDNRA NCVCVNMQKP 360 LSNQIM*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGTNTHQSFQ QPNSALLRFR SAPSSLFADF SHGIDSKRLN PFEGSESERL VSRFGSRADG  60
CNSNDSESPV AGNYSSGLPP HYPRLSSAVN CSSSSSSSSC SSSSSSMCSS LGFLGSNLVR  120
QSSSPAGVLS QLNQNGYGGG SFSRLSGNNN GVEVVSPSSN RLNSQISFSS LVPSSLGMFP  180
QISEQVVGNE KLSNSNNGET QFFTPSGFPF ASWNESSQFS ETFPGIKRDP DSNKKFSSGH  240
QNGEIGNRVH LLSHHLSLPK NVSDVASIEK LLQLQDAVPC RIRAKRGCAT HPRSIAERVR  300
RTRISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKELQK QFKTLSDNRA NCVCVNMQKP  360
LSNQIM*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136581.1	0.0	PREDICTED: transcription factor bHLH130
Swissprot	Q66GR3	2e-91	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0A0LH01	0.0	A0A0A0LH01_CUCSA; Uncharacterized protein
STRING	XP_004136581.1	0.0	(Cucumis sativus)
STRING	XP_004168456.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-92	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.242910.2
Entrez Gene	101204523

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]