PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 386aa MW: 41687.7 Da PI: 6.1249

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.242570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.8	6.9e-17	234	288	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Cucsa.242570.1 234 RKKLRLSKLQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 288 6788899**********************************************98 PP
2	HD-ZIP_I/II	122.8	1.6e-39	234	324	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk Cucsa.242570.1 234 RKKLRLSKLQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 324 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-18	219	291	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-16	220	288	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	230	290	IPR001356	Homeobox domain
SMART	SM00389	3.2E-14	232	294	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-14	234	288	IPR001356	Homeobox domain
CDD	cd00086	4.88E-14	234	291	No hit	No description
PROSITE pattern	PS00027	0	265	288	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-10	290	324	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.2E-25	290	333	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MVELGLSLGD HPSSNSNSNN KKKPFSNFLS KPISSSSNSS SSLMALGFCV GLIGRHSASA 60 SASASVQDDE EDEEQDDEDE DDDRKTVVLA GSTSGLDPPV QLDLLPLAPV PRSSSSSSPL 120 LPFPWLSHHL MGEVGGSSEG GERVETVDVK RVVVEEREDR VAAVAVAALS SPNSTVSCFE 180 MEFGGGGGGG GGIRRKRSWD HMEMETERGG GGGGCSRIMS DDEDNNASAS AAARKKLRLS 240 KLQSAFLEES FKEHTTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLR 300 RCCETLTEEN RRLQKELQEL RALKTSQPFY MQLPATTLTM CPSCERVATT TTTTPAPTTP 360 APSSALCLAN KPKILPFPHL HQAAS*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MVELGLSLGD HPSSNSNSNN KKKPFSNFLS KPISSSSNSS SSLMALGFCV GLIGRHSASA  60
SASASVQDDE EDEEQDDEDE DDDRKTVVLA GSTSGLDPPV QLDLLPLAPV PRSSSSSSPL  120
LPFPWLSHHL MGEVGGSSEG GERVETVDVK RVVVEEREDR VAAVAVAALS SPNSTVSCFE  180
MEFGGGGGGG GGIRRKRSWD HMEMETERGG GGGGCSRIMS DDEDNNASAS AAARKKLRLS  240
KLQSAFLEES FKEHTTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLR  300
RCCETLTEEN RRLQKELQEL RALKTSQPFY MQLPATTLTM CPSCERVATT TTTTPAPTTP  360
APSSALCLAN KPKILPFPHL HQAAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	290	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136729.2	0.0	PREDICTED: homeobox-leucine zipper protein HOX11
TrEMBL	A0A0A0LEE1	0.0	A0A0A0LEE1_CUCSA; Uncharacterized protein
STRING	XP_004136729.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2335	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-55	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Cucsa.242570.1
Entrez Gene	101222778

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]