PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.241990.1
Common NameCsa_3G782720, LOC101219702
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family M-type_MADS
Protein Properties Length: 388aa    MW: 43343.1 Da    PI: 4.3031
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.241990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.16.9e-111151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i ++  r+ +f kRr g+lKK +EL +LC++ +  ++ +++
  Cucsa.241990.1 11 IASDNARKASFKKRRLGLLKKVSELTTLCGVYAFAVVTGPD 51
                    678889***************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.283147IPR002100Transcription factor, MADS-box
CDDcd002669.71E-27285No hitNo description
SuperFamilySSF554555.1E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTRKKVKLVW IASDNARKAS FKKRRLGLLK KVSELTTLCG VYAFAVVTGP DEDHPVIWPS  60
LSAAQHLYRR FHSLPEVERQ KKMTNQETYL KERTTKTQDL LKKHIKKNQE LELDLLMHQL  120
HQGRQIYQLT NGELLGLFWM IEERIRDCRK RIEYHHQVHR LPPPPGLVTS NPALLETENN  180
EMDLVDNGRN LMDQWFIDMV MNTNDKTGGS SSSMAGELGF VQSEGNGVDM MTNGGGNSMM  240
EASEIGGTGT IIVEGDGEEN NLLSEWNFGG NDDCGMSEIE KLVNDIGGVG HAELNASSMD  300
LSHAQADFGI DCNVGGPMGS LFTDGVDVND DGEMMLSGLF ENEITENENV NQNGNDQNNE  360
EEDEEVEDED DEDDILSKEW SNNFSSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLVWIASDNARKASFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136717.10.0PREDICTED: uncharacterized protein LOC101219702
TrEMBLA0A0A0LB390.0A0A0A0LB39_CUCSA; Uncharacterized protein
STRINGXP_004161303.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.14e-37AGAMOUS-like 48
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]