PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 325aa MW: 35464.4 Da PI: 9.7272

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.241980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.3	4e-31	157	213	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq Rak+ e+kl +++rkpy+heSRh hA+rRpRgsgGrF Cucsa.241980.1 157 DGPIYVNAKQYHGIIRRRQIRAKAMMENKL-ARTRKPYMHESRHLHAMRRPRGSGGRF 213 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-34	155	216	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.928	156	216	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-27	159	213	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-23	159	181	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-23	190	213	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MAPQTGCLKE HERIIPNSLG QLSPTPARLW SALGQGSQSI FGDFGQVKAS SIQLGSNGKE 60 FNGTKQVVAH GLDKLNTAPF SIYPGDYKIS MDAQKPSPVF SLQSPLTEYH NRFELGFGQP 120 LICANYPYMD QHYGILSAYG PQIPGRIMLP MSLTSDDGPI YVNAKQYHGI IRRRQIRAKA 180 MMENKLARTR KPYMHESRHL HAMRRPRGSG GRFLNTKNLK NGKSSMEPKK IDEVNLSDST 240 GSQCSVVLQS ESGTLNSPNE AKGRGFSLSS SEVSSLFSRG LQRFQINHLG PSIPSLAEII 300 DGGGHGMVLP KWVAAADNCC DLCV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-17	157	218	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136716.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBL	A0A0A0LE75	0.0	A0A0A0LE75_CUCSA; Uncharacterized protein
STRING	XP_004136716.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	8e-58	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Cucsa.241980.1
Entrez Gene	101219461

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]