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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.241880.1 | ||||||||
Common Name | Csa_3G782620, LOC101208201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 717aa MW: 78724.2 Da PI: 7.2451 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.2 | 1.5e-09 | 401 | 438 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cucsa.241880.1 401 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 438 664459******************************88 PP | |||||||
2 | BELL | 124 | 6.1e-40 | 265 | 336 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+leeV++rY+qy++q+q+vissFe++ag gsa+ Yt+lAl++iS++FrcLkdai++qi Cucsa.241880.1 265 ERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQI 336 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.3E-60 | 188 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-48 | 193 | 333 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 379 | 442 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-9 | 382 | 446 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-11 | 382 | 443 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 383 | 449 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-29 | 385 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 399 | 438 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MATYLHGNSD QFQSSDGGLQ TLVLMNPTYV QFSDTTPPPP PPPSHPNLLF FNSPSSTANT 60 FTTLVQPPPS SHTQQFVGIP LQTTSAASPT SQDHNSHPLN PHHDISPLHG FVPRLQHNIW 120 NQIDPSTAAR DSARAQQGLS LTLSSQHQQA FGSRDVQSQN QQALSGEDNM RISGGSSSSA 180 SGVTNGVAGI QGVLISSKYL KATQELLDEV VNVTQNGIKS ESSPKKATGN QSKMIGDAAA 240 ATGTADGSLE GEADGKQAAE LTTSERQEIQ MKKAKLISML EEVEQRYRQY HHQMQIVISS 300 FEQAAGAGSA RTYTALALQT ISKQFRCLKD AITGQIRAAN KSLGEEECIG RKVEGSRLKF 360 VDHHLRQQRA LQQLGMIQHN AWRPQRGLPE RSVSILRAWL FEHFLHPYPK DSDKHMLAKQ 420 TGLTRSQVSN WFINARVRLW KPMVEEMYME EIKDQEQNGN GSTPTTEKSN DDSVSKSIAP 480 PPETKSPNSK QENSPNQNVH PSISISNSSG GNVRNSSGFT LIGTSSELDG ITQGSPKKQR 540 GPDILHSSNN NVPFINMDIK PREEEEHQNQ NHNPHQNNHH HHHHLLPMKF DEDRQNRDGY 600 SFLGQPHFNI GGFGQYPIGE IARFDADQFT PRFSGNNGVS LTLGLPHCEN LSLNPATHQS 660 FLPNQSIHLG RRTEIGKPTD FSAINASTAH SSTAFETINI QNGKRFAAQL LPDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 7e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 7e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136516.2 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011652036.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0A0LE65 | 0.0 | A0A0A0LE65_CUCSA; Uncharacterized protein | ||||
STRING | XP_004171976.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-167 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.241880.1 |
Entrez Gene | 101208201 |
Publications ? help Back to Top | |||
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