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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.241440.1 |
Common Name | Csa_3G778200, LOC101214938 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
B3 |
Protein Properties |
Length: 257aa MW: 28156.4 Da PI: 8.9544 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.241440.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 104.8 | 4.5e-33 | 2 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77
f+k ltpsdv+k++rlv+pk++ae++ g + ++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++g
Cucsa.241440.1 2 FEKPLTPSDVGKLNRLVIPKQYAEKYfplspsaavataaaaaaaGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAG 96
99*****************************999999999999866667999******************************************* PP
-EEEEEE-SSSEE..EEEEE-S CS
B3 78 DfvvFkldgrsefelvvkvfrk 99
D+vvF++++r++ +l++++ ++
Cucsa.241440.1 97 DVVVFERHRRDGDRLFIGWKKR 118
******9999999999999776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MFEKPLTPSD VGKLNRLVIP KQYAEKYFPL SPSAAVATAA AAAAAGDSAD KGLLLSFEDE 60 SGKIWRFRYS YWNSSQSYVL TKGWSRFVKE KRLDAGDVVV FERHRRDGDR LFIGWKKRSA 120 PSPTDSAVAT GSGGVGGGGG WTRMFCSANS YPNSHRHLPS PPYQSSSDTP HAESSVQSQT 180 VSIGNSKILR LFGVDLECQT DMSEPEPPSL LNIGSSLTLS GRDPTRHTFY PHYSSPLPHH 240 MDFTFSQDVN QTKYQG*
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Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Tanaka M, et al.
The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]
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