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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.239660.1 |
Common Name | Csa_7G237840, LOC101213100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 163aa MW: 17488.1 Da PI: 7.9916 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.239660.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 143.9 | 4.8e-45 | 23 | 123 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+Ca+dCv+apyfpa++p+kf vhk+FGasnv+kll++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i+ lqqq++ l+++la
Cucsa.239660.1 23 PCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLA 117
7********************************************************************************************** PP
DUF260 96 llkeel 101
++++l
Cucsa.239660.1 118 ITQAQL 123
*99885 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MASSEMMMMM NGSCKKGNGA AAPCAACKLL RRRCAHDCVF APYFPADHPH KFSSVHKVFG 60 ASNVSKLLQE LPEQQRSDAV SSMVYEANAR IRDPVYGCVG AISCLQQQVD ALQQQLAITQ 120 AQLVQMKMGQ FTTTSQSSSS TDDLLPPPPN INVAASSSLW SC*
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Publications
? help Back to Top |
- Penfield S, et al.
Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]
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