PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.236170.1
Common NameCsa_7G207020, LOC101221991
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 558aa    MW: 62909.9 Da    PI: 4.5599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.236170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.8e-51161422128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     ppGfrFhPtd+e++ +yLk+k+ g+k++l +v++++d+yk++P++Lp  +k+k+++++w+fF++rd+ky++g ++nrat++gyWk tgkd++v++
  Cucsa.236170.1  16 PPGFRFHPTDDEIILYYLKRKICGRKIKL-DVVADIDVYKWDPEELPglSKLKTGDRQWFFFCPRDRKYPNGAKSNRATSQGYWKVTGKDRTVKC 109
                     8****************************.99***************6559999***************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kktL+fy+grapkge+tdWvmhey++
  Cucsa.236170.1 110 -NSRNVGVKKTLIFYRGRAPKGERTDWVMHEYTM 142
                     .999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5812165IPR003441NAC domain
PROSITE profilePS5100554.52515165IPR003441NAC domain
PfamPF023651.7E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKLLRLSSTD DANPWPPGFR FHPTDDEIIL YYLKRKICGR KIKLDVVADI DVYKWDPEEL  60
PGLSKLKTGD RQWFFFCPRD RKYPNGAKSN RATSQGYWKV TGKDRTVKCN SRNVGVKKTL  120
IFYRGRAPKG ERTDWVMHEY TMNEEELTRC TNVQSYYAVY KVFKKSGPGP KNGEQYGAPF  180
KEEEWVDDEF CDFNFSDGQE MPAEKPKMDA TDIEGETCQA THFSLDDFDR WMKQISDEDL  240
FQSLEADPFA NSLSLGAGQE DHVSTIDLHS PEYILPRSVE MCNSEQQPSI LPESDSNSDV  300
SQLHLFQNHD ARSPPNVSEL PSFLFEGDYL EMDDLGGPEF NLSNIEKPSG SGNLQFEEIN  360
GLNELDQFHD AAMFLNDFGP FEYGPSPNLY KNENSSNVVN PMDGQFQSNP AVTSQISNQM  420
LYDSAINGLA SSETQRTSGV LCDSSNFVGE ANENEVGEDN SASRVSSVFW AFVESIPTTP  480
ASAAEVNESF DRIPSFSRRR LNMNSTTVSS INSSSLITRR SGSKKGRFFL FSIVGALFAI  540
LWVFMGAVRM WQRSISL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-481614216140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817980.0LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139781.10.0PREDICTED: NAC domain-containing protein 100
TrEMBLA0A0A0K8N50.0A0A0A0K8N5_CUCSA; Uncharacterized protein
STRINGXP_004139781.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-126NAC domain containing protein 17
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]