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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.232520.1 | ||||||||
Common Name | Csa_2G360730, LOC101222600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 396aa MW: 44846.6 Da PI: 8.1203 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.9 | 2.5e-20 | 34 | 113 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++lv+p+kf ++ ++ + t+tl+ +sg +W+v l + ++++ ++++GW+eFvka+ L+++D +vF+++g s+f v +f+ Cucsa.232520.1 34 EQQLVIPNKFSNNLR--NKLPDTVTLKGPSGATWDVGL--TSSDDKLYFKRGWQEFVKAHSLEQNDLLVFRYNGMSQF--DVLIFD 113 578*******84444..45889****************..********************************998888..777765 PP | |||||||
2 | B3 | 43.8 | 4.7e-14 | 274 | 367 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.... CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef..el 92 f+ v+ ps+v ++ l +p + ++++ + ++++++l+ + +W k++++ +++ lt+GWk+F +n+L+e D++vF+ +++s++ l Cucsa.232520.1 274 FKVVMRPSHVYRRFFLFIPTQWVTKNlS-L--RNQDIILRV-GSDEWPTKFNFTPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVNKSSGpvVL 364 778999********************53.3..344677766.6688999998877777777***********************77554440044 PP EEE CS B3 93 vvk 95 vk Cucsa.232520.1 365 EVK 367 455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 33 | No hit | No description |
SuperFamily | SSF101936 | 9.42E-22 | 20 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.749 | 22 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-11 | 25 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-22 | 28 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.5E-17 | 35 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.21E-20 | 36 | 113 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-17 | 271 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.85E-19 | 274 | 370 | No hit | No description |
SMART | SM01019 | 9.7E-14 | 274 | 372 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.491 | 274 | 372 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 274 | 369 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-17 | 274 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDKVGDSSNK WAEDIYWSHF QFTHFYQILA GGCEQQLVIP NKFSNNLRNK LPDTVTLKGP 60 SGATWDVGLT SSDDKLYFKR GWQEFVKAHS LEQNDLLVFR YNGMSQFDVL IFDWKSFCEK 120 EASYFVKICE NKKIDSGGQA KRKFREPSLD GFDANINNGA ECDSSENIIH DDSMERMIQD 180 VVSKATNFNG QPEVFSAEPI RTVQTRRKKK TPNKTAIIST PDPVQLSDSD VEATPIKKIG 240 SYVEQYVSHR RAITEGEKNN ALKLAEAASS DTGFKVVMRP SHVYRRFFLF IPTQWVTKNL 300 SLRNQDIILR VGSDEWPTKF NFTPSRQCGG LTSGWKHFSV DNNLEEFDVC VFEPVNKSSG 360 PVVLEVKIFR VVEDVIPLTR VASKGNRKPT KAPEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-15 | 242 | 375 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-15 | 242 | 375 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152721.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A0A0LRE7 | 0.0 | A0A0A0LRE7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152721.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-58 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.232520.1 |
Entrez Gene | 101222600 |
Publications ? help Back to Top | |||
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