PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.232360.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 396aa    MW: 43980.3 Da    PI: 5.9449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.232360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.31.7e-072711819128
             NAM  19 LkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113
                     Lk+  +g +l++   + +++ y ++P+ Lp      +  w++ +++ ++  ++  +  + ksg Wk       ++s +++ +g ++t  +y+g+a
  Cucsa.232360.1  27 LKRISRGGPLPA--NVLDINPYGCNPKMLP------DGVWFYVVSHGNAD-SSFSPW-KLKSGAWK-------LFS-DSSFTGWRTTYEYYEGQA 103
                     444455555555..5778899999999998......23455544444433.322332.34556665.......666.77889************* PP

             NAM 114 pkgektdWvmheyrl 128
                     p   kt W+m+ y +
  Cucsa.232360.1 104 PYECKTAWIMQKYWM 118
                     *************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.24910141IPR003441NAC domain
SuperFamilySSF1019413.14E-1619140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSPSPVPSLA MHMLDLFSSD EETFLELKRI SRGGPLPANV LDINPYGCNP KMLPDGVWFY  60
VVSHGNADSS FSPWKLKSGA WKLFSDSSFT GWRTTYEYYE GQAPYECKTA WIMQKYWMSQ  120
TDLSENSKQK ETISLCKIFL GDEQFQNHEN TLKIDLSITL NSEPNLNHQL VVSDGSTSNN  180
MANGSTSKSE MSEDDKMVEL AVSGKPVDLH LEDVHPERDA ISEGDYLELL DLLNDVPSSS  240
SSSSPNSSCL TMSSDEDFDV MDVLCDAEHD INHDRAQRHA ACIRSSAPFR IKKEVAHQGA  300
SESLVSIKRS SHSPTTENLK TDSTESSSGR LEPELKLPSQ SEKKCYKLQG ASSSHNKKMV  360
SSGQETAVDG GKKKKKKAVG RMKKIQKKYL CFFPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372383KKKKKAVGRMKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-137LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-137LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649606.10.0PREDICTED: uncharacterized protein LOC101220327
RefseqXP_011649607.10.0PREDICTED: uncharacterized protein LOC101220327
RefseqXP_011649608.10.0PREDICTED: uncharacterized protein LOC101220327
TrEMBLA0A0A0LRG00.0A0A0A0LRG0_CUCSA; Uncharacterized protein
STRINGXP_008444686.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-10NAC domain containing protein 28