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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.228480.2 | ||||||||
Common Name | Csa_2G334550, LOC101214025 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 161aa MW: 18584.2 Da PI: 4.0676 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.6 | 1.3e-11 | 22 | 83 | 74 | 128 |
NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++rat+sgyWk d+++++ +g +vg+kk +f+ + ++p++ +t+Wvm+ey++ Cucsa.228480.2 22 ESRATESGYWKDVLMDEPIFCGaNGDEVGIKKYHIFFvgdqeeDDESPTPIQTSWVMQEYHI 83 579*****************9878899*********977765545777888*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.704 | 1 | 122 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-15 | 6 | 120 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-7 | 15 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MHAVGKTLSN GDIHYFFSRV GESRATESGY WKDVLMDEPI FCGANGDEVG IKKYHIFFVG 60 DQEEDDESPT PIQTSWVMQE YHIYNYLLNT HDHTHPSQNN NNNLSQTKSE FGIWVVCRVF 120 EAKENNNIIG RSMFCYEEDD DDDESELSYL DEMYLSLDDI * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681912 | 1e-139 | LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059. | |||
GenBank | LN713265 | 1e-139 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147348.1 | 1e-113 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A0A0LME0 | 1e-112 | A0A0A0LME0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147348.1 | 1e-112 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-19 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.228480.2 |
Entrez Gene | 101214025 |
Publications ? help Back to Top | |||
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