PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.228480.1

Common Name

Csa_2G334550, LOC101214025

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 220aa MW: 25431 Da PI: 4.378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.228480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.8	2.8e-25	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+rF Ptde+lv ++L +k+++++ ++ + +i++++++ ++Pw+++ k+ ++ + yfFs+ + +rat+sgyWk d+++++ Cucsa.228480.1 15 LPPGLRFCPTDEDLVLHFLYHKANSHHrFSNSIIIPHLQLHLYNPWQFHGKTLSNGDIHYFFSRVGE--------SRATESGYWKDVLMDEPIFC 101 79******************999885666667**********9655555556677777644........799************9 PP NAM 95 k.kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 +g +vg+kk +f+ + ++p++ +t+Wvm+ey++ Cucsa.228480.1 102 GaNGDEVGIKKYHIFFvgdqeeDDESPTPIQTSWVMQEYHI 142 878899*****977765545777888*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-31	13	179	IPR003441	NAC domain
PROSITE profile	PS51005	32.272	15	181	IPR003441	NAC domain
Pfam	PF02365	2.6E-17	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDEGGISGNN SLNLLPPGLR FCPTDEDLVL HFLYHKANSH HRFSNSIIIP HLQLHLYNPW 60 QFHGKTLSNG DIHYFFSRVG ESRATESGYW KDVLMDEPIF CGANGDEVGI KKYHIFFVGD 120 QEEDDESPTP IQTSWVMQEY HIYNYLLNTH DHTHPSQNNN NNLSQTKSEF GIWVVCRVFE 180 AKENNNIIGR SMFCYEEDDD DDESELSYLD EMYLSLDDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-20	15	184	20	171	NAC domain-containing protein 19
3swm_B	9e-20	15	184	20	171	NAC domain-containing protein 19
3swm_C	9e-20	15	184	20	171	NAC domain-containing protein 19
3swm_D	9e-20	15	184	20	171	NAC domain-containing protein 19
3swp_A	9e-20	15	184	20	171	NAC domain-containing protein 19
3swp_B	9e-20	15	184	20	171	NAC domain-containing protein 19
3swp_C	9e-20	15	184	20	171	NAC domain-containing protein 19
3swp_D	9e-20	15	184	20	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681912	1e-139	LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBank	LN713265	1e-139	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147348.1	1e-164	PREDICTED: NAC transcription factor 29-like
TrEMBL	A0A0A0LME0	1e-163	A0A0A0LME0_CUCSA; Uncharacterized protein
STRING	XP_004147348.1	1e-163	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31510	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-32	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Cucsa.228480.1
Entrez Gene	101214025

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]