PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.219850.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 259aa    MW: 28780.4 Da    PI: 7.6866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.219850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-132568855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Cucsa.219850.1 25 TERERRKKMRNMFSNLHALLPHL----PPKADKSSIVDEAVNYIKTLQ 68
                    6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-151778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9411767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-132269No hitNo description
Gene3DG3DSA:4.10.280.103.4E-142284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-102568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-72573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.00E-4175215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
KRELETEGKS AGATESSDHD IHIWTERERR KKMRNMFSNL HALLPHLPPK ADKSSIVDEA  60
VNYIKTLQET FQRLHKQKVE KLNNNNNNNN NPSMGCSKIV HHPLPTTREA FLADQASSND  120
DMSSSATLLS HLSTTITPEN VLSNLPLPSP PSAFQTWTSS NLVLSVCGRH AHFCVCSAKK  180
PGLFAALCYV LDKYRIDVVS AHVSSDVHQS FFMIQAHKLN KNGDEFKSFE TSLFGRAATV  240
AEDTFKEAAG EIIFWLSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137111.21e-168PREDICTED: transcription factor bHLH95
TrEMBLA0A0A0K4R51e-165A0A0A0K4R5_CUCSA; Uncharacterized protein
STRINGXP_004137111.11e-166(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-39bHLH family protein