PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.219210.1
Common NameCsa_7G071440, LOC101213173
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 254aa    MW: 27595.5 Da    PI: 9.0226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.219210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001493115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C+ksFs+   L  H  +H
  Cucsa.219210.1  93 YNCNVCNKSFSSYQALGGHKASH 115
                     89**********99999998887 PP
2zf-C2H211.40.001145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k+F++   L  H r+H
  Cucsa.219210.1 145 HQCSICFKCFPTGQALGGHKRRH 167
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.5E-1492117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-993167No hitNo description
SMARTSM003550.01693115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55493120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139123.5E-9144169IPR007087Zinc finger, C2H2
SMARTSM003550.5145167IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704145167IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MALQALNSPS STFPLADPSL DHHHHDSWIK PSKPRSKRPR FDSDDEYLAF CLLMLARGRI  60
SHSDHHHHHA TTNDSYSPSN SSPPPPPLLK LTYNCNVCNK SFSSYQALGG HKASHRKSDA  120
GDNNVSPVVS STLSNSTLGG GVKTHQCSIC FKCFPTGQAL GGHKRRHYDG GSGNNNTNST  180
AATAGSDGNG STLTQTHHRN FDLNIPALPE LWPGFTAGNR RKKSQSQSQE YSTDQEVESP  240
HPLKKPKLLL PME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6834700.0LN683470.1 Cucumis melo genomic scaffold, unassembled_sequence30958.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137088.10.0PREDICTED: zinc finger protein ZAT10
TrEMBLA0A0A0K2F60.0A0A0A0K2F6_CUCSA; Uncharacterized protein
STRINGXP_004155412.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.16e-35salt tolerance zinc finger
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]