PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.219180.1
Common NameCsa_7G071410
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 330aa    MW: 36989.3 Da    PI: 4.4806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.219180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.6e-112502901055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Cucsa.219180.1 250 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 290
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14240306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-12245299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-11249294No hitNo description
PfamPF000104.0E-8250290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEQLINGSFI ANHEDQEEEE EEATFMAQLL FNTKANSPPD PFMATLSYDQ TPSSSTFNYS  60
LSQESSDEIL FPNNNHYYYS NPMNNNNSNS SNYFSLGELG TYYSNDNGSD FHVQVPEDSM  120
NVEVSENNLQ PCFEEAELIK LPEEEAAHYH IDQINCKKRS RGEFGDHVQK GRNERSKKAQ  180
KLTSSTNTTE EDGNAGLSRQ STSTYCSEDE SNASLDQNGG ANNSRSSLNG ANKSRASRGS  240
ATDPQSLYAR KRRERINERL RILQTLVPNG TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD  300
LWMYAPIAYN GMDIGLNPTT PKTAKEKEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817923e-92LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132553e-92LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455031.10.0PREDICTED: transcription factor bHLH54
TrEMBLA0A0A0K6C10.0A0A0A0K6C1_CUCSA; Uncharacterized protein
STRINGXP_004159936.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-49ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]