PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.218190.1
Common NameCsa_7G064580
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 322aa    MW: 34541.4 Da    PI: 4.8071
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.218190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.94.9e-17225260134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Cucsa.218190.1 225 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 260
                     ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.74686121IPR010399Tify domain
SMARTSM009795.3E-986121IPR010399Tify domain
PfamPF062001.3E-1090120IPR010399Tify domain
PfamPF062032.7E-16153195IPR010402CCT domain
PROSITE profilePS5101713.354153195IPR010402CCT domain
SMARTSM004011.7E-12219272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12222271No hitNo description
Gene3DG3DSA:3.30.50.108.7E-16223266IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.90E-17224274No hitNo description
PROSITE profilePS501149.658224276IPR000679Zinc finger, GATA-type
PfamPF003201.0E-14225260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPDSNFEDAM YGSGVMDNGG RDLGNIQNRV DDEDDDINGG EESIDNPQMR FEDSGGMSGS  60
VSVINRVEDV VPSTYISGSD YNPLTGNGGA DQLTLSFRGE VYAFDSVSPD KVQAVLLLLG  120
GYEIPSGIPA IGSAPVNQQG ADGFTVRSVQ PQRAASLSRF REKRKERCFE KKIRYSVRKE  180
VALRMQRKKG QFISSKAIGD EVGSSSVLSQ TLDSGQDDGL LETSCTHCGT SSKSTPMMRR  240
GPAGPRTLCN ACGLKWANKG ILRDLSKVSN PSIQEPSAKE IEQSDGEAAN EHNAAINVDI  300
LTSNGDKKPQ KVLVDVQKLI N*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-159LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-159LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136886.10.0PREDICTED: GATA transcription factor 24 isoform X1
RefseqXP_011658813.10.0PREDICTED: GATA transcription factor 24 isoform X1
SwissprotQ8GXL73e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3BZV10.0A0A1S3BZV1_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_004136886.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-64ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]