PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.213830.1
Common NameCsa_1G505950, LOC101218334
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 344aa    MW: 37451.5 Da    PI: 9.5706
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.213830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.8e-3984143362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++
  Cucsa.213830.1  84 ETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNK 143
                     6789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3367136IPR003851Zinc finger, Dof-type
PfamPF027017.4E-3386141IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.75887141IPR003851Zinc finger, Dof-type
PROSITE patternPS01361089125IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDFSSVPIYL DPPPNWHHQQ SNHHHHPQIS NSNGSPQHQH LLSLPTQQLS SAPSSHVGVG  60
VGVGSIRRGS MADRARMANV PLPETALKCP RCDSTNTKFC YFNNYSLSQP RHFCKSCRRY  120
WTRGGALRNV PVGGGCRRNK KNKTRRSKSP TVAATMAGGN ESQVMNNHSN SPTTTTIPLH  180
SSAENLIGHL QPQHPHLSFM ASLNNFSRFG TSGLGLNFNE IQTQTNIIGN GALLNHHPWR  240
SSQNFPLSGG LETQPGLYPF QISGGDGDEN NTTNSILTPI SRGTHLPPVK IEETQVLNLL  300
KSSNLGINNS ENNQFWSNGS NGWTDLSAIS STSSGHISCD FNH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150185.10.0PREDICTED: dof zinc finger protein DOF3.6
TrEMBLA0A0A0LUU20.0A0A0A0LUU2_CUCSA; Uncharacterized protein
STRINGXP_004150185.10.0(Cucumis sativus)
STRINGXP_004163650.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-43Dof family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]