PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.213230.1
Common NameCsa_1G477540, LOC101204000
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 256aa    MW: 27979.9 Da    PI: 9.6541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.213230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-1267113354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riNs +++Lr l+P +      K +Ka+ L ++v+ +k+L
  Cucsa.213230.1  67 KNHSEAERRRRERINSHLSTLRGLVPCP-----LKRDKATLLAEVVRQVKEL 113
                     58*************************7.....59999*9999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04664113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1168119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1070119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.8E-5148196No hitNo description
CDDcd048733.60E-9151222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAYSYDASTS IDPFLHSLEN FNRGFVRGGS ILSQSLVLNG EKGELVKAPI QASKKRVSEE  60
KALAALKNHS EAERRRRERI NSHLSTLRGL VPCPLKRDKA TLLAEVVRQV KELKKKAAEV  120
SNGVFVPMDT DEVNVEPCGV GANGDMSFKA TLCCEYRPEL LSDLKQTLDS LHLKLVKAEI  180
STLGNRVKNI FIFTSAIADN GDHPEASRHL ASSVHQAISF VLEKASSPEY SPRTTLPMKR  240
RRLSSLDTSS SSSGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
2238242KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149053.10.0PREDICTED: putative transcription factor bHLH107
TrEMBLA0A0A0LX880.0A0A0A0LX88_CUCSA; Uncharacterized protein
STRINGXP_004163475.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-43bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]