PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.213110.3
Common NameCsa_1G472480
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 278aa    MW: 31328.2 Da    PI: 6.6957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.213110.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-1524114186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  ++  +l+rg+l++++W++v++ +       ++ +r+ +qCk++++ ++k+yk ++++ +  + +  s++p++ +l+
  Cucsa.213110.3  24 CWSEDATSTLIDAWGRRFLDLNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFLSSWPFYARLD 114
                     7**************************************9999999*************************99999999999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2522116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGDLTDSHTP SSANSRQVPI REDCWSEDAT STLIDAWGRR FLDLNRGNLR QKDWQDVADS  60
VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFLSSWPFY ARLDELIGPT  120
VSMKKPSSPP LALPLPFRKT PPPSAAASSA IVAVSQKRPA VAMEDVSFRR NYSAAAAAAA  180
AVALSEEEEE EEEEEERVSD DDEAEGEGMS RLARAIKRFG EVYERVEAEK VRQMVELEKQ  240
RMQFAKDLEL QRMHMFMETQ VQLERIKRGK KSTPSDM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657715.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X6
TrEMBLA0A0A0LX811e-174A0A0A0LX81_CUCSA; Uncharacterized protein
STRINGXP_004171548.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-41sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]