 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.207400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
LBD |
| Protein Properties |
Length: 200aa MW: 21683.9 Da PI: 7.7385 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.207400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 135.7 | 1.7e-42 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll +lp+++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+aela
Cucsa.207400.1 31 PCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELA 125
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
Cucsa.207400.1 126 KTQAE 130
*9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 200 aa
Download sequence Send
to blast |
PTSTLLLSHS PSPSPSPSPP PTVQAHVVVT PCAACKILRR RCTQKCVLAP YFPPSDPLKF 60
TIAHRIFGAS NIIKLLLDLP DSQRADAVSS LVYEASARIR DPVYGCAGAI CQLQKQINEL 120
QAELAKTQAE LVNIHCHQTN LVALICKELA QTPPPMSSSS LLPEHRSLDN SFNIVATPQS 180
YQGYTSLFGD SNIWDPLWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681928 | 1e-176 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. |
| GenBank | LN713266 | 1e-176 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
