PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.207390.1 | ||||||||
Common Name | Csa_1G088440, LOC101222021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20308.2 Da PI: 6.7605 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.8e-40 | 19 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C l pyfp+ +p kf ++h++FGasn++kll++lpe++r da++s+vyeA r+rdP+yG++g i++lq+q++ l+ ela Cucsa.207390.1 19 PCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELA 113 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Cucsa.207390.1 114 KAQAE 118 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.189 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-39 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
KSAETNTAST AVVVGSSSPC AACKILRRRC RENCELGPYF PSMEPLKFTI AHRVFGASNI 60 IKLLQDLPES QRGDAVNSMV YEASTRIRDP IYGCAGSIFH LQRQINDLQG ELAKAQAEVL 120 RMHCQQANLM TLICKELGQM PQPPMHDHQS LNDPYNIASP QSYHSYSYLF EECNVLEPMW 180 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-42 | 15 | 141 | 7 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-42 | 15 | 141 | 7 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 1e-90 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 1e-90 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147298.1 | 1e-133 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-60 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A0A0LUS4 | 1e-131 | A0A0A0LUS4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161318.1 | 1e-135 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24500 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-62 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.207390.1 |
Entrez Gene | 101222021 |
Publications ? help Back to Top | |||
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