PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 308aa MW: 36271.1 Da PI: 7.529

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.203800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.8	6.8e-24	60	142	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k lWe ++km+e+gf+rs++qCk+kw+nl +ryk ++++e + s++++p++++l+ Cucsa.203800.1 60 QWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEI---SRQQFPFYTELQ 142 7******************************************************************97...55679**997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.21E-22	59	124	No hit	No description
Pfam	PF13837	2.7E-19	60	144	No hit	No description
PROSITE profile	PS50090	6.818	61	117	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEGHHHPHPH PHPHPHPHPL IHLHQQQQIQ HPPPPPPHLH QSLAVDQATT ATAIADRFPQ 60 WSIQETKEFL MIRAELDQTF METKRNKLLW EITASKMKEK GFNRSAEQCK CKWKNLVTRY 120 KGCETMEPEI SRQQFPFYTE LQAIFGARRE RLLWAEAESG GSGLKKKMMV LSSDDEDEND 180 DSDGDGGETK VSGRKRKKVK GTTMGGAEGS GKSSMNELKE ILEDFMNQQM QMEVQWREAF 240 EAREKERQMK EMEWRRNMEA LEHERIMLER RWREREEQRR MREEVRAEKR DALITALLNK 300 LRRDDHI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	197	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00481	DAP	Transfer from AT5G01380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM854820	0.0	HM854820.1 Cucumis melo subsp. melo clone 00002, complete sequence.
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137715.2	0.0	PREDICTED: trihelix transcription factor GT-3b
Swissprot	Q9SDW0	1e-70	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A0A0LF98	0.0	A0A0A0LF98_CUCSA; Uncharacterized protein
STRING	XP_004172460.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-65	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.203800.1
Entrez Gene	101211490

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]