PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 277aa MW: 29456 Da PI: 8.8048

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.202290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.9	2.9e-40	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+alkcprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ss Cucsa.202290.1 56 KEQALKCPRCNSSNTKFCYYNNYSLSQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRSS 116 6899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	49	114	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.4E-34	58	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDTAHWPQFA GGGGMVVKQM EGGGGGGGSS SSCSKPNSGN NGNGNNLLEK KVRGEKEQAL 60 KCPRCNSSNT KFCYYNNYSL SQPRYFCKAC RRYWTEGGSL RNVPVGGGSR KNKRSSLSSS 120 SSSSDHNKKI NASHQIINHQ DLNLAIFPPN NNNNNTSIST SSSSSSHLLA SFMTAPATGM 180 FNGSGGFGLN ELKPPASLSF SLEGFDQNGV RGYGDLHHHH HQDQTAVMFP IEDMKQSNDH 240 EENRGGHGGD NNNNNNSNNS GGSTGFWNGM LGGGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004145942.2	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	A0A0A0KJS3	0.0	A0A0A0KJS3_CUCSA; Uncharacterized protein
STRING	XP_004174098.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.202290.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]