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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.201400.1 |
Common Name | Csa_4G038690, LOC101211368 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
GRAS |
Protein Properties |
Length: 590aa MW: 64872.8 Da PI: 4.8336 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.201400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 361.8 | 9.5e-111 | 218 | 589 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++Ll+cA+ +s + ++a ++L+r+s+ +dgdp++R+ +yf AL++rl++ + + + l ++e++ ns++ l ++k++++++P+ kf+hlt
Cucsa.201400.1 218 KVLLDCARLCDS-EPNRAAKTLNRISKSLREDGDPIERVGFYFGDALRKRLSS--TPMKNCLDSTESD-ANSEDFLLSYKALNDACPYSKFAHLT 308
78******8877.67788899*******************************9..6666666666664.7899********************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aNqaIle +e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ + + +e+l
Cucsa.201400.1 309 ANQAILEVTERASKIHIVDFGIVQGVQWAALLQALATRATGKPvRVRISGIPAPSLGdsPAASLYATGNRLSEFAKLLELNFEFQP-ILTPIENL 402
***************************************77777**********99998999************************.799***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
+ ++++v+++E+laVn++lql++llde+ + + + L+l kslsP++v++ e ea++n++ F +rf +al++ysa+f+sle +lpr+s er
Cucsa.201400.1 403 KESSFSVQSDEVLAVNFMLQLYNLLDENPTGVH---NALRLAKSLSPHIVTLGEYEASLNRNGFYNRFKNALKFYSAIFESLEPNLPRNSPERLQ 494
*************************99988888...9********************************************************** PP
GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
+Er llgr+i vv + +++ rr r+e +e+W++ +e+ GF+pv+ls++a +qak ll +++ s y++ e+ +++ l W+d pL++vS+Wr
Cucsa.201400.1 495 LERLLLGRRIAGVVGTVEDSrreRRVRMEDKEQWKNLMENTGFEPVALSHYAISQAKILLWNYNySSLYTLIESAPEFLsLAWNDVPLLTVSSWR 589
***********9998766651115567999**********************************9999*****9999999**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 590 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQLIN QKQQQDQQQH HLSPLSPFSI LPWTNNINPS STMASSSSSP 60 NFSFGISSSS FSDPFHVAAP PDSSDPSFHF PNLDHPSAGF RFFPNFSGAG GEFESDEWMD 120 SLVGGGDSTD SSTLPSGCEG YGEFGLYGAD PFNGSQPSAV VLESSYKINS VPPPWPSCPP 180 LVKEERVTNP PAESPLKNDV VEGSSSALEV ESSSPVLKVL LDCARLCDSE PNRAAKTLNR 240 ISKSLREDGD PIERVGFYFG DALRKRLSST PMKNCLDSTE SDANSEDFLL SYKALNDACP 300 YSKFAHLTAN QAILEVTERA SKIHIVDFGI VQGVQWAALL QALATRATGK PVRVRISGIP 360 APSLGDSPAA SLYATGNRLS EFAKLLELNF EFQPILTPIE NLKESSFSVQ SDEVLAVNFM 420 LQLYNLLDEN PTGVHNALRL AKSLSPHIVT LGEYEASLNR NGFYNRFKNA LKFYSAIFES 480 LEPNLPRNSP ERLQLERLLL GRRIAGVVGT VEDSRRERRV RMEDKEQWKN LMENTGFEPV 540 ALSHYAISQA KILLWNYNYS SLYTLIESAP EFLSLAWNDV PLLTVSSWR*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |