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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cucsa.201400.1 |
| Common Name | Csa_4G038690, LOC101211368 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 590aa MW: 64872.8 Da PI: 4.8336 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.201400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 361.8 | 9.5e-111 | 218 | 589 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
++Ll+cA+ +s + ++a ++L+r+s+ +dgdp++R+ +yf AL++rl++ + + + l ++e++ ns++ l ++k++++++P+ kf+hlt
Cucsa.201400.1 218 KVLLDCARLCDS-EPNRAAKTLNRISKSLREDGDPIERVGFYFGDALRKRLSS--TPMKNCLDSTESD-ANSEDFLLSYKALNDACPYSKFAHLT 308
78******8877.67788899*******************************9..6666666666664.7899********************** PP
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aNqaIle +e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g + +l +tg+rL++fA+ l+++fef++ + + +e+l
Cucsa.201400.1 309 ANQAILEVTERASKIHIVDFGIVQGVQWAALLQALATRATGKPvRVRISGIPAPSLGdsPAASLYATGNRLSEFAKLLELNFEFQP-ILTPIENL 402
***************************************77777**********99998999************************.799***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
+ ++++v+++E+laVn++lql++llde+ + + + L+l kslsP++v++ e ea++n++ F +rf +al++ysa+f+sle +lpr+s er
Cucsa.201400.1 403 KESSFSVQSDEVLAVNFMLQLYNLLDENPTGVH---NALRLAKSLSPHIVTLGEYEASLNRNGFYNRFKNALKFYSAIFESLEPNLPRNSPERLQ 494
*************************99988888...9********************************************************** PP
GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
+Er llgr+i vv + +++ rr r+e +e+W++ +e+ GF+pv+ls++a +qak ll +++ s y++ e+ +++ l W+d pL++vS+Wr
Cucsa.201400.1 495 LERLLLGRRIAGVVGTVEDSrreRRVRMEDKEQWKNLMENTGFEPVALSHYAISQAKILLWNYNySSLYTLIESAPEFLsLAWNDVPLLTVSSWR 589
***********9998766651115567999**********************************9999*****9999999**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 590 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQLIN QKQQQDQQQH HLSPLSPFSI LPWTNNINPS STMASSSSSP 60
NFSFGISSSS FSDPFHVAAP PDSSDPSFHF PNLDHPSAGF RFFPNFSGAG GEFESDEWMD 120
SLVGGGDSTD SSTLPSGCEG YGEFGLYGAD PFNGSQPSAV VLESSYKINS VPPPWPSCPP 180
LVKEERVTNP PAESPLKNDV VEGSSSALEV ESSSPVLKVL LDCARLCDSE PNRAAKTLNR 240
ISKSLREDGD PIERVGFYFG DALRKRLSST PMKNCLDSTE SDANSEDFLL SYKALNDACP 300
YSKFAHLTAN QAILEVTERA SKIHIVDFGI VQGVQWAALL QALATRATGK PVRVRISGIP 360
APSLGDSPAA SLYATGNRLS EFAKLLELNF EFQPILTPIE NLKESSFSVQ SDEVLAVNFM 420
LQLYNLLDEN PTGVHNALRL AKSLSPHIVT LGEYEASLNR NGFYNRFKNA LKFYSAIFES 480
LEPNLPRNSP ERLQLERLLL GRRIAGVVGT VEDSRRERRV RMEDKEQWKN LMENTGFEPV 540
ALSHYAISQA KILLWNYNYS SLYTLIESAP EFLSLAWNDV PLLTVSSWR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
