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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.199850.1 | ||||||||
Common Name | Csa_1G160590, LOC101208459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 225aa MW: 25632.4 Da PI: 9.0405 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.8e-06 | 67 | 86 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+ksF+r n++ H+ Cucsa.199850.1 67 FACSICNKSFNRYNNMQMHM 86 78*****************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00061 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgks k + ++H +++ Cucsa.199850.1 151 FMCRKCGKSLAVKGDWRTHEKNC 173 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.12E-6 | 53 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 67 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 1.7E-4 | 67 | 86 | No hit | No description |
SMART | SM00355 | 0.092 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 67 | 94 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 114 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 147 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 110 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEKVEVGLHI GLPNVGDVSY FGDEKNMNVC VKKEEIHSLK KSFSNFNTQG RFWIPTQAQI 60 LVGPMQFACS ICNKSFNRYN NMQMHMWGHG SEYRKGPESL RGTQPAAMLR LPCYCCAQGC 120 KNNINHPRAK PLKDFRTLQT HYKRKHGCKP FMCRKCGKSL AVKGDWRTHE KNCGKLWYCS 180 CGSDFKHKRS LKDHIRSFGK GHSPCSSLDD ECLTGSDDQE DHFC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681928 | 0.0 | LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139578.1 | 1e-169 | PREDICTED: zinc finger protein WIP3 | ||||
Swissprot | Q8W030 | 1e-103 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A0A0LVD5 | 1e-168 | A0A0A0LVD5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139578.1 | 1e-169 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 1e-105 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.199850.1 |
Entrez Gene | 101208459 |
Publications ? help Back to Top | |||
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