PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.199090.1

Common Name

Csa_1G023580, LOC101219708

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 347aa MW: 39613.9 Da PI: 7.7123

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.199090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++k+++++++ ++i vd++k ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ + Cucsa.199090.1 5 LPPGFRFHPTDEELISYYLTQKLSDSSFTS-KAIGVVDLNKNEPWDLPAKATMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFGS 98 79***********************999.88***********999999***********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+gek++Wvmheyr Cucsa.199090.1 99 vGHALVGMKKTLVFYKGRAPRGEKSNWVMHEYRQ 132 78889*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-60	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	58.919	5	153	IPR003441	NAC domain
Pfam	PF02365	3.3E-28	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIS YYLTQKLSDS SFTSKAIGVV DLNKNEPWDL PAKATMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFGSVG HALVGMKKTL VFYKGRAPRG 120 EKSNWVMHEY RQQSSHFFKP SKEEWVVCRV FQKQNTPKKP QQSSSSQPSL SSPCDTNSIV 180 NEFGDHIELS NFNNNNIISS QQTYENNNMI NNNNNNNNMM NMNMNLNLNN WVSPTNETLI 240 PSLSWPLNSN LLTSSNNLSM NSLLLKALQL RTFQQQRDNV LASSSSNTFN NNIHDHRHQA 300 ANIVHSQFGT TNDHLSCFQP SSSSKVFEPS SQQQQEEQPL NLDSLW*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEENLPPGFR FHPTDEELIS YYLTQKLSDS SFTSKAIGVV DLNKNEPWDL PAKATMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFGSVG HALVGMKKTL VFYKGRAPRG  120
EKSNWVMHEY RQQSSHFFKP SKEEWVVCRV FQKQNTPKKP QQSSSSQPSL SSPCDTNSIV  180
NEFGDHIELS NFNNNNIISS QQTYENNNMI NNNNNNNNMM NMNMNLNLNN WVSPTNETLI  240
PSLSWPLNSN LLTSSNNLSM NSLLLKALQL RTFQQQRDNV LASSSSNTFN NNIHDHRHQA  300
ANIVHSQFGT TNDHLSCFQP SSSSKVFEPS SQQQQEEQPL NLDSLW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-53	4	159	19	174	NAC domain-containing protein 19
3swm_B	1e-53	4	159	19	174	NAC domain-containing protein 19
3swm_C	1e-53	4	159	19	174	NAC domain-containing protein 19
3swm_D	1e-53	4	159	19	174	NAC domain-containing protein 19
3swp_A	1e-53	4	159	19	174	NAC domain-containing protein 19
3swp_B	1e-53	4	159	19	174	NAC domain-containing protein 19
3swp_C	1e-53	4	159	19	174	NAC domain-containing protein 19
3swp_D	1e-53	4	159	19	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138243.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A0A0LUW8	0.0	A0A0A0LUW8_CUCSA; Uncharacterized protein
STRING	XP_004154916.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	9e-90	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Cucsa.199090.1
Entrez Gene	101219708

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]