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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.198700.1 | ||||||||
Common Name | Csa_1G015755, LOC101221985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 16897.8 Da PI: 11.9748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.4e-15 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI++ s ++ r +lg+f ae+Aa a+++a++ l+g Cucsa.198700.1 21 FLGVRQRP-SGRWVAEIKVSS---QKLRLWLGTFNRAEDAAMAYDRAARLLRG 69 67******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.44E-27 | 20 | 76 | No hit | No description |
PROSITE profile | PS51032 | 18.597 | 20 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-27 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-31 | 20 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 21 | 32 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 21 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.0E-9 | 23 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MATNSSSLPP NQEINHGRRR FLGVRQRPSG RWVAEIKVSS QKLRLWLGTF NRAEDAAMAY 60 DRAARLLRGR SAKTNFSYDY HHGFFNSTIN QEQTPSLFEH SPKLCRLLQH ALMKNRSRLI 120 STTDHQYHHR RRHQQQQISR NNGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 16 | 83 | 12 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138335.1 | 1e-104 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
TrEMBL | A0A0A0LPP4 | 1e-102 | A0A0A0LPP4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155038.1 | 1e-103 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-14 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.198700.1 |
Entrez Gene | 101221985 |
Publications ? help Back to Top | |||
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