PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.198560.1

Common Name

Csa_1G015610, LOC101212701

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 325aa MW: 35137.8 Da PI: 8.3003

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.198560.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+sss Cucsa.198560.1 33 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSS 94 57899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	34	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MQDIHSIAGG SRLFGGGGGG DRRLRPHLHH HQNHQALKCP RCDSLNTKFC YYNNYNLSQP 60 RHFCKSCRRY WTKGGVLRNV PVGGGCRKTK RSSSSKSKSN SSDAVATPPP LPPPPLPLPL 120 RDRKSTSHSS SESSSLTATT TTAAAAAAAA ATEAVSAPSS NSASGLLNVH DTKLFTGSST 180 TNTNPNFEVP DCGIFSEIGS FTSLITSSNE TLAFGFGNMA DVTAFAMNNH HQFQNQTANQ 240 WPPPPPPSQR MMNVNDELKM QGGYMDQTAQ VDPNSRSNNI GFGALDWQSN GDHQVLFDLP 300 TAVDQAYWSQ NQWNDQDQPN LYLP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011648588.1	1e-168	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A0A0LSJ3	1e-167	A0A0A0LSJ3_CUCSA; Uncharacterized protein
STRING	XP_008453317.1	1e-156	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-34	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Cucsa.198560.1
Entrez Gene	101212701

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]