PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.198090.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 488aa    MW: 54657 Da    PI: 7.0596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.198090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004396418123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k+F +   L  H r+H
  Cucsa.198090.1 396 HKCPICEKVFASGQALGGHKRSH 418
                     79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-6832IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785936IPR007087Zinc finger, C2H2
SMARTSM003550.16931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.67E-8931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.67E-888115No hitNo description
SMARTSM003550.08993115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45293120IPR007087Zinc finger, C2H2
PfamPF139125.0E-695117IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139128.1E-11309333IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93309336IPR007087Zinc finger, C2H2
SMARTSM003550.084309331IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.92E-8309331No hitNo description
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
SuperFamilySSF576677.92E-8391418No hitNo description
PfamPF139122.0E-11396418IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681396418IPR007087Zinc finger, C2H2
SMARTSM003550.013396418IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEANLISRHV CKLCNKSFAC GRSLGGHMRS HLTNNLADND EKHSRTSLQL CNYSGGSLSN  60
MEEEIDFGYG LRKNPKKTQK LEFLSEESSL QDKFCRECGK GFQSWKALFG HMKCHSERGV  120
VFSSSQEEVE EPDSHITDAK QKMVMDIQSD NENEVPNNKR KRSRRRRTSN QMGTGNSTTS  180
FSFATNSSSV SDIEQEQEVA ISLMLLSMDM GNWVGFNSPA ESSDNNSKFL EAPSVVESKT  240
SVSNGCEAGS TMIKKSQLNQ RAGSKSSLKK NEQNQGRFSS DMFFKSPKKT LAEFWDSKIC  300
KKPKKRSKFE CDICNKIFDS YQALGGHRAS HKKLKGCFIE SPMEDEEEEE EEEDEEEEEI  360
GSESSGEMAI SANPKAESKG SKGINNGGRI EKNSKHKCPI CEKVFASGQA LGGHKRSHLM  420
NGSETKNRET IQIQKQVPEI RRFLDLNLPP EPVERESKDH NLASLNPWWV AANEHKHEAL  480
VNVGFHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453249.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3BWK00.0A0A1S3BWK0_CUCME; zinc finger protein ZAT1-like
STRINGXP_008453249.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-30C2H2-like zinc finger protein