PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197830.1
Common NameCsa_1G009870, LOC101214387
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 375aa    MW: 42184.8 Da    PI: 8.5478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.1e-55171431129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv ++++ + ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk++++ 
  Cucsa.197830.1  17 LPPGFRFHPTDEELISHYLFEKVMDSSFCC-RAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDIYR- 109
                     79*************************999.89***************888999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfy+grapkgek+dWvmheyrle
  Cucsa.197830.1 110 GKSLVGMKKTLVFYRGRAPKGEKSDWVMHEYRLE 143
                     999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6413167IPR003441NAC domain
PROSITE profilePS5100559.31517167IPR003441NAC domain
PfamPF023651.0E-2818142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAAAAGVVVN KQDHLELPPG FRFHPTDEEL ISHYLFEKVM DSSFCCRAIG DVDLNKSEPW  60
DLPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKDIYRG KSLVGMKKTL  120
VFYRGRAPKG EKSDWVMHEY RLEGKLSALN LPKTAKNEWV ICRVFQKNSS GKKVDISGIS  180
KLGSFGNEFS HSILPPLTDS LPFNGETKRP VVQLANNSNV PCFSIAMDSQ TKLEPMASSY  240
NNNNNTNTSL FSIIPNPIDS FPRNPHSNSM YSPPNQTFSL PPPNLQFTNS LLLQEQQSLL  300
RALIQNVNGG NTFKTEREKI SISQETCLTT DLNNEISSVF PNLEMGRRPF GNSQQEAPPG  360
PNMPPIDLDG FWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-531417314171NO APICAL MERISTEM PROTEIN
1ut4_B8e-531417314171NO APICAL MERISTEM PROTEIN
1ut7_A8e-531417314171NO APICAL MERISTEM PROTEIN
1ut7_B8e-531417314171NO APICAL MERISTEM PROTEIN
3swm_A8e-531417317174NAC domain-containing protein 19
3swm_B8e-531417317174NAC domain-containing protein 19
3swm_C8e-531417317174NAC domain-containing protein 19
3swm_D8e-531417317174NAC domain-containing protein 19
3swp_A8e-531417317174NAC domain-containing protein 19
3swp_B8e-531417317174NAC domain-containing protein 19
3swp_C8e-531417317174NAC domain-containing protein 19
3swp_D8e-531417317174NAC domain-containing protein 19
4dul_A8e-531417314171NAC domain-containing protein 19
4dul_B8e-531417314171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660158.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-135NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A0LPF00.0A0A0A0LPF0_CUCSA; Uncharacterized protein
STRINGXP_004154965.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-132NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]