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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.197630.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27623.7 Da PI: 6.7424 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 39 | 87 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ R+++N+ f L l + + Ka+iL +A + +k+L Cucsa.197630.3 39 KIHKAEREKLKREHLNDLFLDLANALELT----EPNNGKASILSEASRLLKDL 87 567889********************996....57799999**9999988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.95E-4 | 35 | 87 | No hit | No description |
PROSITE profile | PS50888 | 10.105 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-5 | 38 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-9 | 38 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVSEVPSKPV VETDAPVMAS MLHLVICDRL ANQVKVPKKI HKAEREKLKR EHLNDLFLDL 60 ANALELTEPN NGKASILSEA SRLLKDLFGQ IECLRKEHAL LLSESRYVDI EKTELREETS 120 ALASQIEKLQ SELQSRAVHS KPDLNVTPPS EFPQQGTTVQ HFSGECLGLP VMEPTLQQTH 180 AVFIVPVRPD LPSYPATDAT HAPIMPTSHV SKPHARYPTP ADSWPAGLLK FQARQHFGNL 240 RQKEEMV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-173 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-173 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660048.1 | 1e-156 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 7e-59 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A0A0LSA0 | 1e-154 | A0A0A0LSA0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138160.1 | 1e-155 | (Cucumis sativus) | ||||
STRING | XP_004154976.1 | 1e-155 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.197630.3 |