PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.197380.1

Common Name

Csa_1G007910, LOC101215588

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 277aa MW: 30172.6 Da PI: 6.3063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.197380.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.3e-11	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Cucsa.197380.1 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-18	151	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.30E-10	151	208	No hit	No description
PROSITE profile	PS50888	15.828	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-18	153	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDPPLVNESS FSAANPSAYS LASIWPFGGD QGGSVLGLRM ANLAQNLGGF RECSTNRDGS 60 MEESTVTEQS GGGRKRKDVS SEDESSRMVS TSSANQLSNS NDKRMKVVES RDENGGIKAE 120 VDPNSSDGKK LVEQSPKPEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV 180 PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNITPGIEGF TVKNIVNQPY 240 DAAGILYGSQ AARDYTQGAQ TEWLHMQIGG GFERTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-154	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-154	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138140.1	0.0	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	9e-88	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0A0LS74	0.0	A0A0A0LS74_CUCSA; Uncharacterized protein
STRING	XP_004154996.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.197380.1
Entrez Gene	101215588

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]