PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.196250.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 512aa    MW: 56807.3 Da    PI: 6.172
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.196250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.62.2e-1031395101374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPil 91 
                     l +lL++cAeav+ +d + a+ lL++l+ +a   g+++qR+a++f+++La rla  ++  y  +  p  ++ ++    +++  al+l +e+ P +
  Cucsa.196250.1 139 LLHLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGYVGFgLPIMSRVDHssdRKKKDEALNLAYEIYPHI 233
                     579***************************************************97776666554333333333112555556667799****** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                     +f+h++aN+ Ile +ege+ vH++D+++     +G QW +L++ La+ +++   lR+Tg+g     s ++++ +ge+L+  Ae +gv++e  + v
  Cucsa.196250.1 234 QFGHFVANSSILEVFEGENSVHVLDLGMAfglpYGHQWHSLIERLAE-SSNRRLLRVTGIGL----SVNRYRVMGEKLKAHAEGVGVQVEVLA-V 322
                     *************************87762222678**********9.57779*********....9***********************999.7 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     + +le+l++++++++ gEal++ +++q+h +++es        +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+
  Cucsa.196250.1 323 EGNLENLRPQDIKLHDGEALVITSIFQMHCVVKESRGALT---SVLRMIYDLSPKALVLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPK 414
                     99*****************************977665555...8*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
                      +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++ p++  +++qak  + k+k ++gy++ ee+g+lvlgWk++p+v++S
  Cucsa.196250.1 415 YDTRRAKIEQFYFAEEIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIK--VMAQAKQWIGKFKaNEGYTIVEEKGCLVLGWKSKPIVAAS 507
                     ***************************************************95..899************************************* PP

            GRAS 372 aWr 374
                     +W+
  Cucsa.196250.1 508 CWK 510
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.844113491IPR005202Transcription factor GRAS
PfamPF035147.5E-101139510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVLDGDGGSF FSTDFTSVTK EDEDTMGDSG AAHWLSLLDD TTASSRWVIS FSDEFRHKRL  60
KIETESTPTE DGSGNSSNNS SSLSRSNSCD SLSTGFRAHI WTYNQRYLAA EAVEEAAAAI  120
INAEESAAEE DASADGMRLL HLLVACAEAV ACRDRSHASI LLSELRANAL VFGSSFQRVA  180
SCFVQGLADR LALVQPLGYV GFGLPIMSRV DHSSDRKKKD EALNLAYEIY PHIQFGHFVA  240
NSSILEVFEG ENSVHVLDLG MAFGLPYGHQ WHSLIERLAE SSNRRLLRVT GIGLSVNRYR  300
VMGEKLKAHA EGVGVQVEVL AVEGNLENLR PQDIKLHDGE ALVITSIFQM HCVVKESRGA  360
LTSVLRMIYD LSPKALVLVE QDSNHNGPFF LGRFMEALHY YSAIFDSLDA MLPKYDTRRA  420
KIEQFYFAEE IKNIVSCEGM ARVERHERVD QWRRRMSRAG FQASPIKVMA QAKQWIGKFK  480
ANEGYTIVEE KGCLVLGWKS KPIVAASCWK C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5114650926378Protein SCARECROW
5b3h_A2e-5114650925377Protein SCARECROW
5b3h_D2e-5114650925377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818140.0LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138071.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1S3CLP80.0A0A1S3CLP8_CUCME; DELLA protein GAI-like
STRINGXP_004138071.10.0(Cucumis sativus)
STRINGXP_004161347.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-71RGA-like 1