 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.195790.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
Trihelix |
| Protein Properties |
Length: 284aa MW: 32613.9 Da PI: 10.1726 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.195790.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 46.6 | 8.7e-15 | 12 | 101 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
Wt +++ +Li a +++ +l+rg+l+ ++W+e+++++ ++r+f r+++qCk++++ l+++yk +k + ++ + + +p+f+ l+
Cucsa.195790.1 12 WTFDHTSTLIHAWGQRHLDLNRGSLRHKHWQEIADAVnsshgHDRKFFRTAIQCKNRIDTLKRKYKIEKVRIQESGGKYVCAWPFFSCLD 101
****************************************999***********************9999888877888889****9886 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MPSTVPLRED SWTFDHTSTL IHAWGQRHLD LNRGSLRHKH WQEIADAVNS SHGHDRKFFR 60
TAIQCKNRID TLKRKYKIEK VRIQESGGKY VCAWPFFSCL DDLIGNSHKA STSVSVSNSQ 120
SSPVTSPKLS LFSKVPVAPR SVTKKRRSTH VYRSFCDSYL RRDENLNEDE GKDGLDSDNS 180
LSGSSFKDRE VGYRKLAEAI RTITDIYERV EAEKQRQVLE LEMQRMQFMK DLEYQRMQLL 240
LDIHLKFQKI KRARRASEAA AGNNPRLHSG KEGFLWSLGL GNS*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G58630.1 | 7e-57 | sequence-specific DNA binding transcription factors |
