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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.194800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 8749.94 Da PI: 10.8115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.6 | 4.6e-30 | 26 | 76 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss Cucsa.194800.1 26 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 76 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.97E-29 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-40 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.45 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.10E-38 | 19 | 77 | No hit | No description |
PRINTS | PR00404 | 2.7E-30 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 20 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-28 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MFGPKEQNPL PPTPKSTMGR GRVEIKKIEN INSRQVTFSK RRNGLMKKAK ELSVLCDAEV 60 AIVVFSSTGR LYEFSSTX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-20 | 18 | 77 | 1 | 60 | MEF2C |
5f28_B | 4e-20 | 18 | 77 | 1 | 60 | MEF2C |
5f28_C | 4e-20 | 18 | 77 | 1 | 60 | MEF2C |
5f28_D | 4e-20 | 18 | 77 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681878 | 1e-115 | LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036. | |||
GenBank | LN713262 | 1e-115 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150520.2 | 2e-49 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q9M2K8 | 1e-31 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A1S3C2E6 | 7e-47 | A0A1S3C2E6_CUCME; MADS-box transcription factor 23-like | ||||
STRING | XP_008455789.1 | 1e-47 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 4e-34 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.194800.1 |