PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.194390.1
Common NameCsa_2G162660, LOC101221096
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 288aa    MW: 31023.7 Da    PI: 7.0242
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.194390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18210244135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Cucsa.194390.1 210 CLHCGAEKTPQWRAGPFGPKTLCNACGVRFKSGRL 244
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.793204240IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-16204254IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14206268No hitNo description
Gene3DG3DSA:3.30.50.103.9E-14208242IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.52E-13209257No hitNo description
PfamPF003205.1E-16210244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESSLAFMDD LLDFSSDIGE EDEEDDAVPP FSVKPKSSST TAPDSSDLNA AAMHPDDSSS  60
CRVLPEEYAE EELEWLSNED AFPAVETFVD ILSDHHHHHA PQPPPLPSVS KQNSPVSVLE  120
STSISSHGET TNGGNKTSVH SSSILMSCCG SLKVPSKARS KRRRGRHISG HHLLFKQQPS  180
SKNLKQVVPT TATAAVVAAT TGTAGIGRKC LHCGAEKTPQ WRAGPFGPKT LCNACGVRFK  240
SGRLVPEYRP ASSPTFSAEL HSNSHRKVME MRRQKQLGMV VNPMDKG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818440.0LN681844.1 Cucumis melo genomic scaffold, anchoredscaffold00057.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150343.10.0PREDICTED: GATA transcription factor 1
TrEMBLA0A0A0LKH90.0A0A0A0LKH9_CUCSA; Uncharacterized protein
STRINGXP_004164489.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-49GATA transcription factor 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]