PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.193210.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 603aa    MW: 67485.8 Da    PI: 5.1425
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.193210.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.81.2e-122454287
        trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                    g++r++k+Ckek+en++k+yk++keg+++r  ++ +t+++f+qlea
  Cucsa.193210.2  2 GYKRNAKKCKEKFENVQKYYKRTKEGRGGR--QDGKTYKFFTQLEA 45
                    9***************************98..56667*******85 PP
2trihelix104.95.8e-33355440187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+kqevlaLi++r  +e++++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr  e+s+tcpyf++l+a
  Cucsa.193210.2 355 RWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSSKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFNELDA 440
                     8*********************************************************************8.78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-7246No hitNo description
PROSITE profilePS500906.992348412IPR017877Myb-like domain
PfamPF138371.3E-22354441No hitNo description
CDDcd122031.74E-30354419No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGYKRNAKKC KEKFENVQKY YKRTKEGRGG RQDGKTYKFF TQLEALHNAN VAPSSSNSSF  60
TLPHPLPAAA AATTTVGFGI SNPTPISSVK ISSSSSQTQM GIFSTPSDHF TIRPPPAVAA  120
PMGVSFSSNT SSASTEDDDD DNEDEEMGFD VDLEGEPENV AGSSRKRRRG VIKGNNDEWR  180
SSSSSGDHKM MMEFFEGLMK QVMEKQEVMQ QKFLEAIEKR EQDRMVREEN WKKEEMFRLS  240
QEQERMAQER TISASRDAAI IAFLQKFTGQ TIQFSAPAPA PQVPLPVPMA VSVPMPTPVP  300
APLSPVSSHQ PMQPQTLPHL QNQPPSNTIP LEQSKPKFQE NSQGGDGSSE PISSRWPKQE  360
VLALIKLRGG LESKYQETGP KGPLWEEISA GMIKMGYKRS SKRCKEKWEN INKYFKKVKE  420
SNKKRREDSK TCPYFNELDA LYRKKILSTT AAATASDHSG SFEQNPIQNM EIIPPSTTTT  480
TDHHLQSQPH SSSIPQGLSA TLFGEGTEEQ QQQPTSTKPE DIVNELMELQ DDDVYRRHLN  540
QDDGNDENND DYCSDDDEDD EDDLPEEKRN SNIDYKIEFQ RRNNVGNSNG VASEFQSMAV  600
VQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311KRNAKKCKE
2164168RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654662.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBLA0A1S3AU590.0A0A1S3AU59_CUCME; trihelix transcription factor GTL1-like isoform X1
STRINGXP_004145967.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-62Trihelix family protein