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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.193210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 715aa MW: 78897.5 Da PI: 8.9916 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 96 | 3.4e-30 | 97 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em++ +r++ lk+plW+evs+k+ e g++r++k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea Cucsa.193210.1 97 RWPRQETLALLKIRSEMDSVFRDATLKGPLWDEVSRKLGEMGYKRNAKKCKEKFENVQKYYKRTKEGRGGR--QDGKTYKFFTQLEA 181 8********************************************************************98..56667*******85 PP | |||||||
2 | trihelix | 104.6 | 7.4e-33 | 491 | 576 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+kqevlaLi++r +e++++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyf++l+a Cucsa.193210.1 491 RWPKQEVLALIKLRGGLESKYQETGPKGPLWEEISAGMIKMGYKRSSKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFNELDA 576 8*********************************************************************8.78999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.039 | 94 | 156 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.655 | 96 | 154 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.5E-20 | 96 | 182 | No hit | No description |
CDD | cd12203 | 2.50E-28 | 96 | 161 | No hit | No description |
PROSITE profile | PS50090 | 6.992 | 484 | 548 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.09 | 488 | 550 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-22 | 490 | 577 | No hit | No description |
CDD | cd12203 | 2.29E-30 | 490 | 555 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MEPPAPGSGS GLPDPSQLFR VVSTPPPPPS LTVDTTISDS QQVEAASPIS SRPPAVPSSY 60 EELIRLSGGG GGGQMVVDDD EADGRSGGGS GGSGGNRWPR QETLALLKIR SEMDSVFRDA 120 TLKGPLWDEV SRKLGEMGYK RNAKKCKEKF ENVQKYYKRT KEGRGGRQDG KTYKFFTQLE 180 ALHNANVAPS SSNSSFTLPH PLPAAAAATT TVGFGISNPT PISSVKISSS SSQTQMGIFS 240 TPSDHFTIRP PPAVAAPMGV SFSSNTSSAS TEDDDDDNED EEMGFDVDLE GEPENVAGSS 300 RKRRRGVIKG NNDEWRSSSS SGDHKMMMEF FEGLMKQVME KQEVMQQKFL EAIEKREQDR 360 MVREENWKKE EMFRLSQEQE RMAQERTISA SRDAAIIAFL QKFTGQTIQF SAPAPAPQVP 420 LPVPMAVSVP MPTPVPAPLS PVSSHQPMQP QTLPHLQNQP PSNTIPLEQS KPKFQENSQG 480 GDGSSEPISS RWPKQEVLAL IKLRGGLESK YQETGPKGPL WEEISAGMIK MGYKRSSKRC 540 KEKWENINKY FKKVKESNKK RREDSKTCPY FNELDALYRK KILSTTAAAT ASDHSGSFEQ 600 NPIQNMEIIP PSTTTTTDHH LQSQPHSSSI PQGLSATLFG EGTEEQQQQP TSTKVKLVNP 660 LNKTIILITT LFINSDYCFV FEARRHCERV DGAAGRRRLS TSSQPRRWQR RKQR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | KRNAKKCKE |
2 | 300 | 304 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654663.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A1S3AU59 | 0.0 | A0A1S3AU59_CUCME; trihelix transcription factor GTL1-like isoform X1 | ||||
STRING | XP_004145967.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-61 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.193210.1 |