PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.185900.1

Common Name

Csa_6G426360, LOC101220747

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 699aa MW: 76365.7 Da PI: 7.6029

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.185900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.5	5.4e-09	412	449	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cucsa.185900.1 412 FEHflHPYPKDSDKIILAKQTGLTRSQVSNWFINARVR 449 554459******************************88 PP
2	BELL	110.8	7.9e-36	267	338	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rq+lq+kkakL+ +l+eV+++Ykqy++q++ v+s Fe++aglgsak+Y+slAl +iS++FrcLkdai++qi Cucsa.185900.1 267 QRQDLQMKKAKLIGMLDEVEQKYKQYHQQIRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQI 338 699********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-60	189	336	IPR006563	POX domain
Pfam	PF07526	5.1E-45	194	334	IPR006563	POX domain
PROSITE profile	PS50071	11.888	390	453	IPR001356	Homeobox domain
SMART	SM00389	2.2E-9	393	457	IPR001356	Homeobox domain
CDD	cd00086	5.37E-12	393	454	No hit	No description
SuperFamily	SSF46689	9.84E-17	394	459	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-28	396	459	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-17	410	449	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MATYFHGGSE IQNNSDGIHT LYLMNPNYVP YSDTHSQSSH NMLFLNPSST HALNPSTLPH 60 PPPSNNHFVG IPLPTTDPLR PSYHEISTTL HPHRLHYNLW APVDQQHQHH QQPLHADSAD 120 LTFRRPTAQQ SLSLSLSSQQ SLYRTLSAEQ EIQGGGGGGG GGGGAPSGEE IRVSGNSGTS 180 VSVVSSGITG VQSVILGSKY LKAAQELLDE VVHVGKANFK TDKFGDGTKD KMKMKRESTT 240 TIGGGSSATT GGGETTSKSV AELSTAQRQD LQMKKAKLIG MLDEVEQKYK QYHQQIRGVV 300 SCFEQAAGLG SAKSYASLAL ETISKQFRCL KDAICGQIKA TGKSLGEDQE NWLGSSKMEG 360 SSTTSSSRLR YVDHHLRQQR ALQQLGMIQH NTWRPQRGLP ERAVSVLRAW LFEHFLHPYP 420 KDSDKIILAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNG DSQDMIRGGG 480 SQHQNNNNNN RTHNDPQYSK TENLMNNNPS HSSISSSSIL GIGSTTVGGG FSLVPPSSDN 540 NILLSTPKKP RTTTTTAAIT TTNNNNNVVS ENPSSESMLL RDIDIVNSNS FPVGEIGSTF 600 NSELLTPRFH ANGVSLTLAL PHNNSDHLSL SPNQTNYHHL SSNQNLHLGR SSRLDITNHH 660 PGPPDFSDVN PTAPPSYDHV DMQTTKRFAA QLLPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MATYFHGGSE IQNNSDGIHT LYLMNPNYVP YSDTHSQSSH NMLFLNPSST HALNPSTLPH  60
PPPSNNHFVG IPLPTTDPLR PSYHEISTTL HPHRLHYNLW APVDQQHQHH QQPLHADSAD  120
LTFRRPTAQQ SLSLSLSSQQ SLYRTLSAEQ EIQGGGGGGG GGGGAPSGEE IRVSGNSGTS  180
VSVVSSGITG VQSVILGSKY LKAAQELLDE VVHVGKANFK TDKFGDGTKD KMKMKRESTT  240
TIGGGSSATT GGGETTSKSV AELSTAQRQD LQMKKAKLIG MLDEVEQKYK QYHQQIRGVV  300
SCFEQAAGLG SAKSYASLAL ETISKQFRCL KDAICGQIKA TGKSLGEDQE NWLGSSKMEG  360
SSTTSSSRLR YVDHHLRQQR ALQQLGMIQH NTWRPQRGLP ERAVSVLRAW LFEHFLHPYP  420
KDSDKIILAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNG DSQDMIRGGG  480
SQHQNNNNNN RTHNDPQYSK TENLMNNNPS HSSISSSSIL GIGSTTVGGG FSLVPPSSDN  540
NILLSTPKKP RTTTTTAAIT TTNNNNNVVS ENPSSESMLL RDIDIVNSNS FPVGEIGSTF  600
NSELLTPRFH ANGVSLTLAL PHNNSDHLSL SPNQTNYHHL SSNQNLHLGR SSRLDITNHH  660
PGPPDFSDVN PTAPPSYDHV DMQTTKRFAA QLLPDFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	9e-16	399	457	5	63	Homeobox protein Meis2
3k2a_B	9e-16	399	457	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657593.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
TrEMBL	A0A0A0KEF7	0.0	A0A0A0KEF7_CUCSA; Uncharacterized protein
STRING	XP_004156066.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	3e-89	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Cucsa.185900.1
Entrez Gene	101220747

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]