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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.185760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 21908.1 Da PI: 9.6467 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.7 | 3.6e-43 | 18 | 149 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 pGfrF Pt+eelv +yL+++++g + ++++vi+ vdiy++eP +L + +++ ++++w+fF+k+++++a+g r+nr+t+ sgyWkatg+ + Cucsa.185760.1 18 LPGFRFFPTEEELVLFYLHNQLQGCRKDIHRVIPVVDIYEIEPFNLSRysgeRCRRDSEQWFFFVKQQERQARGGRANRTTSsgSGYWKATGSPT 112 59***************************99***************8545665666788********************8876689********* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++++g+kkt+vfy+g+ap+g+kt+W m+ey+ Cucsa.185760.1 113 YVYSSENRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 149 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.022 | 17 | 186 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-43 | 18 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-22 | 19 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDHDQVIIRE EEEEDQSLPG FRFFPTEEEL VLFYLHNQLQ GCRKDIHRVI PVVDIYEIEP 60 FNLSRYSGER CRRDSEQWFF FVKQQERQAR GGRANRTTSS GSGYWKATGS PTYVYSSENR 120 VIGVKKTMVF YRGKAPTGTK TKWKMNEYKA IQDIIPPHSP FSSTPIPQVI KFNLFVKMKI 180 LLLRLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-29 | 9 | 149 | 7 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-133 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-133 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140261.1 | 1e-124 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 7e-63 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0A0KEE9 | 1e-123 | A0A0A0KEE9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140261.1 | 1e-124 | (Cucumis sativus) | ||||
STRING | XP_004171840.1 | 1e-124 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-65 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.185760.1 |
Publications ? help Back to Top | |||
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